Bioinformatics

Whether your team is engaged in RNA Seq, Exome Sequencing, ChIP Seq or one of our other services, Interactome can customize a pipeline to suit your needs. Our Omics aggregator will empower your team to get more work done on their own. Easily control workflow, results, and dataset iterations with our turnkey tool to augment your exosome and EV pipeline development.  Integrating this approach into EV biomarker discovery, diagnostics, or therapeutic development can provide meaningful insights to convert cellular noise into cellular signal.

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Our top services

RNA-Seq

Raw Data QC, Filtering, Mapping, Data Summarization, Expression Quantification, Differentially Expressed Genes, Pathways, and Gene Ontology Analysis

Exome Sequencing

Raw Data QC, Pre-processing, Mapping with 3 different tools, Realignment and Quality Recalibration, Multiple Samples Variant Calling, Variant Annotation, Variant Comparison, Filtration, and Summarization

Somatic Mutation Detection
for Tumor/Normal Pairs

Raw Data QC, Pre- processing, Mapping with 2 different tools, Realignment and Quality Recalibration, Somatic Mutation Detection with 4 different tools, Variant Annotation, and Summarization

HI-Seq

Raw Data QC, Pre- processing, Mapping with 2 different tools, Realignment and Quality Recalibration, Somatic Mutation Detection with 4 different tools, Variant Annotation, and Summarization

We also offer:

ChIP-Seq

Raw Data QC, Filtering, Mapping, Peak Calling, Peak Differential Analysis, Peak Related Genes Analysis, Gene Ontology Analysis, and Annotation

Whole Genome
Re-Sequencing

Raw Data QC, Filtering, Mapping, Genotyping, SNP Detection, InDel Detection, SV (Somatic SV) Detection, CNV Analysis, and Annotation

Consensus Genotyping Pipeline

Genotyping, SNP Detection and InDel Detection using three different methods (Samtools, GATK and Atlas-2), comparison of variant calls, list of consensus call variants, and list of method specific calls 

De-novo Assembly

Raw data QC, Merging, Clipping, Filtering, Contigs Assemble, Scaffold Assembly, Assemble Statistics, and Downstream Analysis

Small RNA-Seq

Raw Data QC, Filtering, Mapping, Data Summarization, Quantification, Detection of Differentially Expressed miRNAs, Putative Gene Target Prediction, and Pathways Analysis